Function classified_ranked_file_nodes_with_reasons 

pub(crate) fn classified_ranked_file_nodes_with_reasons(
    store: &AtlasStore,
    query: &str,
    folder: Option<&str>,
    file_pattern: Option<&str>,
    limit: usize,
    include_content: bool,
    content_selection: ContentSelection,
) -> Result<Vec<ClassifiedRankedNode>, CliError>

Load ranked files with persisted classification and optional explicit selection.